sub:assertion {
sub:get-org-to-ns-associations dct:description "This query returns all organism-to-nucleotide-sequence associations." ;
dct:license <
http://www.apache.org/licenses/LICENSE-2.0> ;
a <
https://w3id.org/kpxl/grlc/grlc-query> ;
rdfs:label "Get Organism to Nucleotide Sequence Associations" ;
<
https://w3id.org/kpxl/grlc/endpoint> <
https://w3id.org/np/l/nanopub-query-1.1/repo/type/dc3636ccda207965f3ac58e3a54c80d1a9db39ba097848e5b41bf3fec7d66e44> ;
<
https://w3id.org/kpxl/grlc/sparql> """prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix dct: <http://purl.org/dc/terms/>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
prefix biodiv: <https://w3id.org/kpxl/biodiv/terms/>
prefix biolink: <https://w3id.org/biolink/vocab/>
prefix nt: <https://w3id.org/np/o/ntemplate/>
select ?taxonName ?taxonName_label ?relation ?nucleotideSequence ?creator ?date ?np where {
graph npa:graph {
?np npx:hasNanopubType biodiv:OrganismToNucleotideSequenceAssociation .
?np npa:hasValidSignatureForPublicKeyHash ?pubkey .
filter not exists { ?npx npx:invalidates ?np ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }
?np dct:created ?date .
?np np:hasAssertion ?a .
?np np:hasPublicationInfo ?i .
?np npx:introduces ?association .
optional { ?np npx:signedBy ?creator . }
}
graph ?a {
?association a biodiv:OrganismToNucleotideSequenceAssociation .
?association biolink:predicate ?relation .
?association biolink:subject ?organism .
?organism a ?taxonConcept .
?taxonConcept biodiv:hasTaxonName ?taxonName .
?association biolink:object ?nucleotideSequence .
}
graph ?i {
optional { ?taxonName nt:hasLabelFromApi ?taxonName_label }
}
}
order by desc(?date)""" .
}