https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/Head https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4 http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/assertion https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4 http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/provenance https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4 http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/pubinfo https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/assertion http://id.crossref.org/issn/0302-9743 http://purl.org/dc/terms/title Data Integration in the Life Sciences https://doi.org/10.1007/11799511_7 http://purl.org/dc/terms/abstract Linking the biomedical literature to other data resources is notoriously difficult and requires text mining. Text mining aims to automatically extract facts from literature. Since authors write in natural language, text mining is a great natural language processing challenge, which is far from being solved. We propose an alternative: If authors and editors summarize the main facts in a controlled natural language, text mining will become easier and more powerful. To demonstrate this approach, we use the language Attempto Controlled English (ACE). We define a simple model to capture the main aspects of protein interactions. To evaluate our approach, we collected a dataset of 459 paragraph headings about protein interaction from literature. 56% of these headings can be represented exactly in ACE and another 23% partially. These results indicate that our approach is feasible. https://doi.org/10.1007/11799511_7 http://purl.org/dc/terms/date 2006 https://doi.org/10.1007/11799511_7 http://purl.org/dc/terms/isPartOf http://id.crossref.org/issn/0302-9743 https://doi.org/10.1007/11799511_7 http://purl.org/dc/terms/title Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions https://doi.org/10.1007/11799511_7 http://purl.org/ontology/bibo/authorList https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/author-list https://doi.org/10.1007/11799511_7 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/spar/fabio/BookChapter https://orcid.org/0000-0002-1267-0234 http://schema.org/affiliation https://ror.org/02crff812 https://orcid.org/0000-0002-1267-0234 http://xmlns.com/foaf/0.1/name Tobias Kuhn https://ror.org/02crff812 http://xmlns.com/foaf/0.1/name University of Zurich, Switzerland https://ror.org/042aqky30 http://xmlns.com/foaf/0.1/name Technische Universität Dresden, Dresden, Germany https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/author-list http://www.w3.org/1999/02/22-rdf-syntax-ns#_1 https://orcid.org/0000-0002-1267-0234 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/author-list http://www.w3.org/1999/02/22-rdf-syntax-ns#_2 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/loic-royer https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/author-list http://www.w3.org/1999/02/22-rdf-syntax-ns#_3 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/norbert-e-fuchs https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/author-list http://www.w3.org/1999/02/22-rdf-syntax-ns#_4 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/michael-schroeder https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/loic-royer http://schema.org/affiliation https://ror.org/042aqky30 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/loic-royer http://xmlns.com/foaf/0.1/name Loic Royer https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/michael-schroeder http://schema.org/affiliation https://ror.org/042aqky30 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/michael-schroeder http://xmlns.com/foaf/0.1/name Michael Schroeder https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/norbert-e-fuchs http://schema.org/affiliation https://ror.org/02crff812 https://w3id.org/np/RA3ynam1bWWwGynJTWVdYtxneUu6dr2O3ePoofL1YMnT4/norbert-e-fuchs http://xmlns.com/foaf/0.1/name Norbert E. 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